IL_5U9G_001
3D structure
- PDB id
- 5U9G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GUGGAUG*CUGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5U9G_001 not in the Motif Atlas
- Geometric match to IL_4WF9_001
- Geometric discrepancy: 0.0802
- The information below is about IL_4WF9_001
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_04021.2
- Basepair signature
- cWW-L-R-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
5U9G|1|01|G|24
5U9G|1|01|U|25
5U9G|1|01|G|26
5U9G|1|01|G|27
5U9G|1|01|A|28
5U9G|1|01|U|29
5U9G|1|01|G|30
*
5U9G|1|01|C|510
5U9G|1|01|U|511
5U9G|1|01|G|512
5U9G|1|01|A|513
5U9G|1|01|A|514
5U9G|1|01|A|515
5U9G|1|01|C|516
Current chains
- Chain 01
- 23S ribosomal RNA
Nearby chains
- Chain 19
- 50S ribosomal protein L20
- Chain 21
- 50S ribosomal protein L22
- Chain 30
- 50S ribosomal protein L32
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