IL_5U9G_074

3D structure

PDB id

5U9G (explore in PDB, NAKB, or RNA 3D Hub)

Description

3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUAG*CGAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5U9G_074 not in the Motif Atlas

Homologous match to IL_5J7L_317

Geometric discrepancy: 0.1395

The information below is about IL_5J7L_317

Detailed Annotation

UAA/GAN variation

Broad Annotation

No text annotation

Motif group

IL_77691.5

Basepair signature

cWW-tSH-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

5U9G|1|01|U|1864
5U9G|1|01|U|1865
5U9G|1|01|A|1866
5U9G|1|01|G|1867
*
5U9G|1|01|C|1874
5U9G|1|01|G|1875
5U9G|1|01|A|1876
5U9G|1|01|A|1877
5U9G|1|01|G|1878

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 03

50S ribosomal protein L1