IL_5U9G_076
3D structure
- PDB id
- 5U9G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CGAAAUUCCUUG*CCUG
- Length
- 16 nucleotides
- Bulged bases
- 5U9G|1|01|A|1938, 5U9G|1|01|U|1944, 5U9G|1|01|U|1963
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5U9G_076 not in the Motif Atlas
- Geometric match to IL_7A0S_072
- Geometric discrepancy: 0.1488
- The information below is about IL_7A0S_072
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_04332.3
- Basepair signature
- cWW-L-R-L-cWW-L-L-R-L-R-L
- Number of instances in this motif group
- 2
Unit IDs
5U9G|1|01|C|1934
5U9G|1|01|G|1935
5U9G|1|01|A|1936
5U9G|1|01|A|1937
5U9G|1|01|A|1938
5U9G|1|01|U|1939
5U9G|1|01|U|1940
5U9G|1|01|C|1941
5U9G|1|01|C|1942
5U9G|1|01|U|1943
5U9G|1|01|U|1944
5U9G|1|01|G|1945
*
5U9G|1|01|C|1961
5U9G|1|01|C|1962
5U9G|1|01|U|1963
5U9G|1|01|G|1964
Current chains
- Chain 01
- 23S ribosomal RNA
Nearby chains
- Chain 04
- 50S ribosomal protein L2
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
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