IL_5U9G_082

3D structure

PDB id

5U9G (explore in PDB, NAKB, or RNA 3D Hub)

Description

3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5U9G_082 not in the Motif Atlas

Homologous match to IL_5J7L_326

Geometric discrepancy: 0.1093

The information below is about IL_5J7L_326

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_28037.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

5U9G|1|01|U|2085
5U9G|1|01|U|2086
5U9G|1|01|G|2087
*
5U9G|1|01|C|2232
5U9G|1|01|U|2233
5U9G|1|01|G|2234

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 04

50S ribosomal protein L2

Chain 26

50S ribosomal protein L28

Chain X

Transfer RNA; tRNA