IL_5U9G_108

3D structure

PDB id

5U9G (explore in PDB, NAKB, or RNA 3D Hub)

Description

3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGUCCC*GAAAC

Length

11 nucleotides

Bulged bases

5U9G|1|02|U|25

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5U9G_108 not in the Motif Atlas

Homologous match to IL_7RQB_112

Geometric discrepancy: 0.2118

The information below is about IL_7RQB_112

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5U9G|1|02|G|23
5U9G|1|02|G|24
5U9G|1|02|U|25
5U9G|1|02|C|26
5U9G|1|02|C|27
5U9G|1|02|C|28
*
5U9G|1|02|G|56
5U9G|1|02|A|57
5U9G|1|02|A|58
5U9G|1|02|A|59
5U9G|1|02|C|60

Current chains

Chain 02

5S ribosomal RNA

Nearby chains

Chain 07

50S ribosomal protein L5

Chain 17

50S ribosomal protein L18