IL_5U9G_131

3D structure

PDB id

5U9G (explore in PDB, NAKB, or RNA 3D Hub)

Description

3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5U9G_131 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.4275

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

5U9G|1|A|U|409
5U9G|1|A|G|410
5U9G|1|A|A|411
5U9G|1|A|A|412
5U9G|1|A|G|413
5U9G|1|A|A|414
5U9G|1|A|A|415
5U9G|1|A|G|416
*
5U9G|1|A|U|427
5U9G|1|A|G|428
5U9G|1|A|U|429
5U9G|1|A|A|430
5U9G|1|A|A|431
5U9G|1|A|A|432
5U9G|1|A|G|433

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain D

30S ribosomal protein S4