IL_5U9G_148
3D structure
- PDB id
- 5U9G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CAAAC*GGUAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5U9G_148 not in the Motif Atlas
- Homologous match to IL_4LFB_033
- Geometric discrepancy: 0.0668
- The information below is about IL_4LFB_033
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.7
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Number of instances in this motif group
- 14
Unit IDs
5U9G|1|A|C|779
5U9G|1|A|A|780
5U9G|1|A|A|781
5U9G|1|A|A|782
5U9G|1|A|C|783
*
5U9G|1|A|G|799
5U9G|1|A|G|800
5U9G|1|A|U|801
5U9G|1|A|A|802
5U9G|1|A|G|803
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain 01
- Large subunit ribosomal RNA; LSU rRNA
- Chain K
- 30S ribosomal protein S11
- Chain U
- 30S ribosomal protein S21
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