IL_5U9G_151

3D structure

PDB id

5U9G (explore in PDB, NAKB, or RNA 3D Hub)

Description

3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGG*UU

Length

5 nucleotides

Bulged bases

5U9G|1|A|G|926

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5U9G_151 not in the Motif Atlas

Homologous match to IL_4LFB_036

Geometric discrepancy: 0.1412

The information below is about IL_4LFB_036

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.14

Basepair signature

cWW-L-cWW

Number of instances in this motif group

50

Unit IDs

5U9G|1|A|G|925
5U9G|1|A|G|926
5U9G|1|A|G|927
*
5U9G|1|A|U|1390
5U9G|1|A|U|1391

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain V

truncated mRNA