IL_5UQ7_018

3D structure

PDB id

5UQ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex with dnaX mRNA stemloop and E-site tRNA ('in' conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

5UQ7|1|A|A|764

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UQ7_018 not in the Motif Atlas

Homologous match to IL_7A0S_016

Geometric discrepancy: 0.1121

The information below is about IL_7A0S_016

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

5UQ7|1|A|C|697
5UQ7|1|A|C|698
*
5UQ7|1|A|G|763
5UQ7|1|A|A|764
5UQ7|1|A|G|765

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L2