IL_5UQ7_055

3D structure

PDB id

5UQ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex with dnaX mRNA stemloop and E-site tRNA ('in' conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UAG*CAGG

Length

7 nucleotides

Bulged bases

5UQ7|1|A|G|1559

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UQ7_055 not in the Motif Atlas

Homologous match to IL_7RQB_056

Geometric discrepancy: 0.1515

The information below is about IL_7RQB_056

Detailed Annotation

Isolated tWW turn

Broad Annotation

No text annotation

Motif group

IL_54997.7

Basepair signature

cWW-tWW-cWW

Number of instances in this motif group

8

Unit IDs

5UQ7|1|A|U|1433
5UQ7|1|A|A|1434
5UQ7|1|A|G|1435
*
5UQ7|1|A|C|1557
5UQ7|1|A|A|1558
5UQ7|1|A|G|1559
5UQ7|1|A|G|1560

Current chains

Chain A

23S rRNA

Nearby chains