IL_5UQ7_059

3D structure

PDB id

5UQ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex with dnaX mRNA stemloop and E-site tRNA ('in' conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AGAAG*UGGU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UQ7_059 not in the Motif Atlas

Homologous match to IL_7RQB_060

Geometric discrepancy: 0.1283

The information below is about IL_7RQB_060

Detailed Annotation

UAA/GAN variation

Broad Annotation

UAA/GAN variation

Motif group

IL_07235.1

Basepair signature

cWW-tSH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

5UQ7|1|A|A|1469
5UQ7|1|A|G|1470
5UQ7|1|A|A|1471
5UQ7|1|A|A|1472
5UQ7|1|A|G|1473
*
5UQ7|1|A|U|1518
5UQ7|1|A|G|1519
5UQ7|1|A|G|1520
5UQ7|1|A|U|1523

Current chains

Chain A

23S rRNA

Nearby chains