IL_5UQ7_069

3D structure

PDB id

5UQ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex with dnaX mRNA stemloop and E-site tRNA ('in' conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UGCGAAC*GGAGGUAUA

Length

16 nucleotides

Bulged bases

5UQ7|1|A|G|1801, 5UQ7|1|A|G|1816, 5UQ7|1|A|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UQ7_069 not in the Motif Atlas

Homologous match to IL_7RQB_070

Geometric discrepancy: 0.1024

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

5UQ7|1|A|U|1798
5UQ7|1|A|G|1799
5UQ7|1|A|C|1800
5UQ7|1|A|G|1801
5UQ7|1|A|A|1802
5UQ7|1|A|A|1803
5UQ7|1|A|C|1804
*
5UQ7|1|A|G|1813
5UQ7|1|A|G|1814
5UQ7|1|A|A|1815
5UQ7|1|A|G|1816
5UQ7|1|A|G|1817
5UQ7|1|A|U|1818
5UQ7|1|A|A|1819
5UQ7|1|A|U|1820
5UQ7|1|A|A|1821

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA