IL_5UQ7_084

3D structure

PDB id

5UQ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex with dnaX mRNA stemloop and E-site tRNA ('in' conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UQ7_084 not in the Motif Atlas

Geometric match to IL_5MWI_001

Geometric discrepancy: 0.2485

The information below is about IL_5MWI_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_68118.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

29

Unit IDs

5UQ7|1|A|C|2108
5UQ7|1|A|U|2109
5UQ7|1|A|G|2110
*
5UQ7|1|A|C|2179
5UQ7|1|A|U|2180
5UQ7|1|A|G|2181

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L1

Chain z

Transfer RNA; tRNA