IL_5UQ7_085

3D structure

PDB id

5UQ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex with dnaX mRNA stemloop and E-site tRNA ('in' conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GCGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UQ7_085 not in the Motif Atlas

Homologous match to IL_7RQB_085

Geometric discrepancy: 0.3871

The information below is about IL_7RQB_085

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5UQ7|1|A|G|2110
5UQ7|1|A|C|2111
5UQ7|1|A|G|2112
5UQ7|1|A|U|2113
5UQ7|1|A|A|2114
5UQ7|1|A|G|2115
5UQ7|1|A|G|2116
5UQ7|1|A|A|2117
5UQ7|1|A|U|2118
5UQ7|1|A|A|2119
5UQ7|1|A|G|2120
*
5UQ7|1|A|C|2178
5UQ7|1|A|C|2179

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L1

Chain z

Transfer RNA; tRNA