IL_5UQ7_179

3D structure

PDB id

5UQ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex with dnaX mRNA stemloop and E-site tRNA ('in' conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GCC*GCC*C

Length

7 nucleotides

Bulged bases

5UQ7|1|x|C|45

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UQ7_179 not in the Motif Atlas

Geometric match to IL_2O3X_003

Geometric discrepancy: 0.3383

The information below is about IL_2O3X_003

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

5UQ7|1|x|G|32
5UQ7|1|x|C|33
5UQ7|1|x|C|34
*
5UQ7|1|x|G|44
5UQ7|1|x|C|45
5UQ7|1|x|C|47
*
5UQ7|1|x|C|47

Current chains

Chain x

messenger RNA

Nearby chains

Chain c

30S ribosomal protein S3