IL_5UYK_012

3D structure

PDB id

5UYK (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with cognate ternary complex not base-paired to A site codon (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGAG*UGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UYK_012 not in the Motif Atlas

Homologous match to IL_5J7L_256

Geometric discrepancy: 0.1257

The information below is about IL_5J7L_256

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

5UYK|1|01|G|536
5UYK|1|01|G|537
5UYK|1|01|A|538
5UYK|1|01|G|539
*
5UYK|1|01|U|554
5UYK|1|01|G|555
5UYK|1|01|A|556
5UYK|1|01|C|557

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 12

50S ribosomal protein L13

Chain 19

50S ribosomal protein L20