IL_5UYK_038

3D structure

PDB id

5UYK (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with cognate ternary complex not base-paired to A site codon (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAUG*CGC

Length

7 nucleotides

Bulged bases

5UYK|1|01|U|1033

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UYK_038 not in the Motif Atlas

Homologous match to IL_4WF9_041

Geometric discrepancy: 0.1271

The information below is about IL_4WF9_041

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

5UYK|1|01|G|1031
5UYK|1|01|A|1032
5UYK|1|01|U|1033
5UYK|1|01|G|1034
*
5UYK|1|01|C|1121
5UYK|1|01|G|1122
5UYK|1|01|C|1123

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 02

5S ribosomal RNA; 5S rRNA

Chain 15

50S ribosomal protein L16

Chain 34

50S ribosomal protein L36