3D structure

PDB id
5UYK (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome bound with cognate ternary complex not base-paired to A site codon (Structure I)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
AUAAGUAA*UGAAAUU
Length
15 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5UYK_046 not in the Motif Atlas
Homologous match to IL_5J7L_289
Geometric discrepancy: 0.1013
The information below is about IL_5J7L_289
Detailed Annotation
8x7 Sarcin-Ricin; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_04346.10
Basepair signature
cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
Number of instances in this motif group
15

Unit IDs

5UYK|1|01|A|1262
5UYK|1|01|U|1263
5UYK|1|01|A|1264
5UYK|1|01|A|1265
5UYK|1|01|G|1266
5UYK|1|01|U|1267
5UYK|1|01|A|1268
5UYK|1|01|A|1269
*
5UYK|1|01|U|2011
5UYK|1|01|G|2012
5UYK|1|01|A|2013
5UYK|1|01|A|2014
5UYK|1|01|A|2015
5UYK|1|01|U|2016
5UYK|1|01|U|2017

Current chains

Chain 01
23S ribosomal RNA

Nearby chains

Chain 06
50S ribosomal protein L4
Chain 21
50S ribosomal protein L22
Chain 30
50S ribosomal protein L32

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