IL_5UYK_096

3D structure

PDB id

5UYK (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with cognate ternary complex not base-paired to A site codon (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUG*CAAGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UYK_096 not in the Motif Atlas

Geometric match to IL_6CK5_002

Geometric discrepancy: 0.3983

The information below is about IL_6CK5_002

Detailed Annotation

8-nt loop receptor

Broad Annotation

Loop-receptor motif

Motif group

IL_70784.1

Basepair signature

cWW-cWW-cSH-cWW-L

Number of instances in this motif group

7

Unit IDs

5UYK|1|01|C|2521
5UYK|1|01|U|2522
5UYK|1|01|G|2523
*
5UYK|1|01|C|2540
5UYK|1|01|A|2541
5UYK|1|01|A|2542
5UYK|1|01|G|2543
5UYK|1|01|G|2544

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 12

50S ribosomal protein L13

Chain 34

50S ribosomal protein L36