IL_5UYK_131

3D structure

PDB id

5UYK (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with cognate ternary complex not base-paired to A site codon (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UYK_131 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.1755

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

5UYK|1|A|U|409
5UYK|1|A|G|410
5UYK|1|A|A|411
5UYK|1|A|A|412
5UYK|1|A|G|413
5UYK|1|A|A|414
5UYK|1|A|A|415
5UYK|1|A|G|416
*
5UYK|1|A|U|427
5UYK|1|A|G|428
5UYK|1|A|U|429
5UYK|1|A|A|430
5UYK|1|A|A|431
5UYK|1|A|A|432
5UYK|1|A|G|433

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain D

30S ribosomal protein S4