IL_5UYK_168

3D structure

PDB id

5UYK (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with cognate ternary complex not base-paired to A site codon (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UYK_168 not in the Motif Atlas

Homologous match to IL_6CZR_164

Geometric discrepancy: 0.1682

The information below is about IL_6CZR_164

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5UYK|1|A|C|1303
5UYK|1|A|G|1304
5UYK|1|A|G|1305
5UYK|1|A|A|1306
5UYK|1|A|U|1307
5UYK|1|A|U|1308
*
5UYK|1|A|A|1329
5UYK|1|A|U|1330
5UYK|1|A|G|1331
5UYK|1|A|A|1332
5UYK|1|A|A|1333
5UYK|1|A|G|1334

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain M

30S ribosomal protein S13