3D structure

PDB id
5UYK (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome bound with cognate ternary complex not base-paired to A site codon (Structure I)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
CAC*GAAG
Length
7 nucleotides
Bulged bases
5UYK|1|A|A|1493
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5UYK_172 not in the Motif Atlas
Geometric match to IL_8UO6_002
Geometric discrepancy: 0.2823
The information below is about IL_8UO6_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_31737.3
Basepair signature
cWW-L-cWW
Number of instances in this motif group
12

Unit IDs

5UYK|1|A|C|1407
5UYK|1|A|A|1408
5UYK|1|A|C|1409
*
5UYK|1|A|G|1491
5UYK|1|A|A|1492
5UYK|1|A|A|1493
5UYK|1|A|G|1494

Current chains

Chain A
16S ribosomal RNA

Nearby chains

Chain 01
Large subunit ribosomal RNA; LSU rRNA
Chain L
30S ribosomal protein S12
Chain V
mRNA
Chain Y
Transfer RNA; tRNA

Coloring options:


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