IL_5UYK_191

3D structure

PDB id

5UYK (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with cognate ternary complex not base-paired to A site codon (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

5UYK|1|01|G|277

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UYK_191 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.2544

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

5UYK|1|01|C|274
5UYK|1|01|C|275
5UYK|1|01|U|276
5UYK|1|01|G|277
5UYK|1|01|A|278
5UYK|1|01|A|279
5UYK|1|01|U|280
5UYK|1|01|C|281
*
5UYK|1|01|G|359
5UYK|1|01|U|360
5UYK|1|01|G|361
5UYK|1|01|A|362
5UYK|1|01|G|363

Current chains

Chain 01

23S ribosomal RNA

Nearby chains