3D structure

PDB id
5UYL (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome bound with cognate ternary complex base-paired to A site codon (Structure II)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.6 Å

Loop

Sequence
GAAC*GAGUGAAAAAGAAC
Length
18 nucleotides
Bulged bases
5UYL|1|01|A|504, 5UYL|1|01|A|508
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5UYL_011 not in the Motif Atlas
Homologous match to IL_5J7L_255
Geometric discrepancy: 0.1033
The information below is about IL_5J7L_255
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_81516.2
Basepair signature
cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L
Number of instances in this motif group
6

Unit IDs

5UYL|1|01|G|481
5UYL|1|01|A|482
5UYL|1|01|A|483
5UYL|1|01|C|484
*
5UYL|1|01|G|496
5UYL|1|01|A|497
5UYL|1|01|G|498
5UYL|1|01|U|499
5UYL|1|01|G|500
5UYL|1|01|A|501
5UYL|1|01|A|502
5UYL|1|01|A|503
5UYL|1|01|A|504
5UYL|1|01|A|505
5UYL|1|01|G|506
5UYL|1|01|A|507
5UYL|1|01|A|508
5UYL|1|01|C|509

Current chains

Chain 01
23S ribosomal RNA

Nearby chains

Chain 21
50S ribosomal protein L22
Chain 23
50S ribosomal protein L24

Coloring options:


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