3D structure

PDB id
5UYL (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome bound with cognate ternary complex base-paired to A site codon (Structure II)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.6 Å

Loop

Sequence
UAUGUAG*UGAAA
Length
12 nucleotides
Bulged bases
5UYL|1|01|U|1714
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5UYL_064 not in the Motif Atlas
Homologous match to IL_5J7L_309
Geometric discrepancy: 0.1596
The information below is about IL_5J7L_309
Detailed Annotation
6x5 Sarcin-Ricin; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_88269.4
Basepair signature
cWW-tWW-cSH-tWH-tHS-cWW
Number of instances in this motif group
3

Unit IDs

5UYL|1|01|U|1712
5UYL|1|01|A|1713
5UYL|1|01|U|1714
5UYL|1|01|G|1715
5UYL|1|01|U|1716
5UYL|1|01|A|1717
5UYL|1|01|G|1718
*
5UYL|1|01|U|1742
5UYL|1|01|G|1743
5UYL|1|01|A|1744
5UYL|1|01|A|1745
5UYL|1|01|A|1746

Current chains

Chain 01
23S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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