IL_5UYL_081

3D structure

PDB id

5UYL (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with cognate ternary complex base-paired to A site codon (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UUGA*UUAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UYL_081 not in the Motif Atlas

Geometric match to IL_4WF9_110

Geometric discrepancy: 0.3381

The information below is about IL_4WF9_110

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_65740.1

Basepair signature

cWW-L-R-L-R-cWW

Number of instances in this motif group

6

Unit IDs

5UYL|1|01|U|2105
5UYL|1|01|U|2106
5UYL|1|01|G|2107
5UYL|1|01|A|2108
*
5UYL|1|01|U|2181
5UYL|1|01|U|2182
5UYL|1|01|A|2183
5UYL|1|01|A|2184

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 03

50S ribosomal protein L1

Chain X

Transfer RNA; tRNA