IL_5UYL_185

3D structure

PDB id

5UYL (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with cognate ternary complex base-paired to A site codon (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

5UYL|1|01|G|277

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UYL_185 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.2752

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

5UYL|1|01|C|274
5UYL|1|01|C|275
5UYL|1|01|U|276
5UYL|1|01|G|277
5UYL|1|01|A|278
5UYL|1|01|A|279
5UYL|1|01|U|280
5UYL|1|01|C|281
*
5UYL|1|01|G|359
5UYL|1|01|U|360
5UYL|1|01|G|361
5UYL|1|01|A|362
5UYL|1|01|G|363

Current chains

Chain 01

23S ribosomal RNA

Nearby chains