IL_5UYM_035

3D structure

PDB id

5UYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with cognate ternary complex base-paired to A site codon, closed 30S (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

5UYM|1|01|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UYM_035 not in the Motif Atlas

Geometric match to IL_4WF9_039

Geometric discrepancy: 0.1601

The information below is about IL_4WF9_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

5UYM|1|01|U|1018
5UYM|1|01|U|1019
5UYM|1|01|A|1020
5UYM|1|01|A|1021
5UYM|1|01|G|1022
5UYM|1|01|U|1023
5UYM|1|01|G|1024
*
5UYM|1|01|C|1140
5UYM|1|01|U|1141
5UYM|1|01|A|1142
5UYM|1|01|A|1143
5UYM|1|01|A|1144

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 08

50S ribosomal protein L6

Chain 12

50S ribosomal protein L13

Chain 34

50S ribosomal protein L36