IL_5UYP_001
3D structure
- PDB id
- 5UYP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound with near-cognate ternary complex base-paired to A site codon, open 30S (Structure II-nc)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GUGGAUG*CUGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5UYP_001 not in the Motif Atlas
- Geometric match to IL_4WF9_001
- Geometric discrepancy: 0.1071
- The information below is about IL_4WF9_001
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_22311.1
- Basepair signature
- cWW-cWW-tSH-tHS-tHS-L-R-cWW
- Number of instances in this motif group
- 10
Unit IDs
5UYP|1|01|G|24
5UYP|1|01|U|25
5UYP|1|01|G|26
5UYP|1|01|G|27
5UYP|1|01|A|28
5UYP|1|01|U|29
5UYP|1|01|G|30
*
5UYP|1|01|C|510
5UYP|1|01|U|511
5UYP|1|01|G|512
5UYP|1|01|A|513
5UYP|1|01|A|514
5UYP|1|01|A|515
5UYP|1|01|C|516
Current chains
- Chain 01
- 23S ribosomal RNA
Nearby chains
- Chain 19
- 50S ribosomal protein L20
- Chain 21
- 50S ribosomal protein L22
- Chain 30
- 50S ribosomal protein L32
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