IL_5UYP_006
3D structure
- PDB id
- 5UYP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound with near-cognate ternary complex base-paired to A site codon, open 30S (Structure II-nc)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GGAACUG*CUAAGUAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5UYP_006 not in the Motif Atlas
- Geometric match to IL_7RQB_006
- Geometric discrepancy: 0.1007
- The information below is about IL_7RQB_006
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.7
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
5UYP|1|01|G|188
5UYP|1|01|G|189
5UYP|1|01|A|190
5UYP|1|01|A|191
5UYP|1|01|C|192
5UYP|1|01|U|193
5UYP|1|01|G|194
*
5UYP|1|01|C|201
5UYP|1|01|U|202
5UYP|1|01|A|203
5UYP|1|01|A|204
5UYP|1|01|G|205
5UYP|1|01|U|206
5UYP|1|01|A|207
5UYP|1|01|C|208
Current chains
- Chain 01
- 23S ribosomal RNA
Nearby chains
- Chain 14
- 50S ribosomal protein L15
- Chain 26
- 50S ribosomal protein L28
- Chain 33
- 50S ribosomal protein L35
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