IL_5UYP_015

3D structure

PDB id

5UYP (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with near-cognate ternary complex base-paired to A site codon, open 30S (Structure II-nc)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UYP_015 not in the Motif Atlas

Homologous match to IL_5J7L_259

Geometric discrepancy: 0.1421

The information below is about IL_5J7L_259

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

5UYP|1|01|C|672
5UYP|1|01|C|673
5UYP|1|01|G|674
*
5UYP|1|01|C|806
5UYP|1|01|U|807
5UYP|1|01|G|808

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 06

50S ribosomal protein L4

Chain 14

50S ribosomal protein L15