IL_5UYP_034

3D structure

PDB id

5UYP (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with near-cognate ternary complex base-paired to A site codon, open 30S (Structure II-nc)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

5UYP|1|01|U|1012

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UYP_034 not in the Motif Atlas

Homologous match to IL_5J7L_279

Geometric discrepancy: 0.1111

The information below is about IL_5J7L_279

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

5UYP|1|01|G|1011
5UYP|1|01|U|1012
5UYP|1|01|C|1013
*
5UYP|1|01|G|1149
5UYP|1|01|C|1150

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 12

50S ribosomal protein L13

Chain 19

50S ribosomal protein L20