IL_5UYP_062
3D structure
- PDB id
- 5UYP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound with near-cognate ternary complex base-paired to A site codon, open 30S (Structure II-nc)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- ACUAGG*CUGU
- Length
- 10 nucleotides
- Bulged bases
- 5UYP|1|01|G|1992
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5UYP_062 not in the Motif Atlas
- Geometric match to IL_5J7L_307
- Geometric discrepancy: 0.1554
- The information below is about IL_5J7L_307
- Detailed Annotation
- Intercalated tWH
- Broad Annotation
- Intercalated tWH
- Motif group
- IL_76758.2
- Basepair signature
- cWW-L-R-L-cWW-L-L
- Number of instances in this motif group
- 7
Unit IDs
5UYP|1|01|A|1669
5UYP|1|01|C|1670
5UYP|1|01|U|1671
5UYP|1|01|A|1672
5UYP|1|01|G|1673
5UYP|1|01|G|1674
*
5UYP|1|01|C|1990
5UYP|1|01|U|1991
5UYP|1|01|G|1992
5UYP|1|01|U|1993
Current chains
- Chain 01
- 23S ribosomal RNA
Nearby chains
- Chain 05
- 50S ribosomal protein L3
- Chain 13
- 50S ribosomal protein L14
Coloring options: