IL_5UYP_063
3D structure
- PDB id
- 5UYP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound with near-cognate ternary complex base-paired to A site codon, open 30S (Structure II-nc)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CGUAAC*GGAGAAG
- Length
- 13 nucleotides
- Bulged bases
- 5UYP|1|01|G|1699
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5UYP_063 not in the Motif Atlas
- Homologous match to IL_7RQB_068
- Geometric discrepancy: 0.0955
- The information below is about IL_7RQB_068
- Detailed Annotation
- tSH-tSH-tHH-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_65969.2
- Basepair signature
- cWW-tSH-tSH-tHH-tHS-cWW
- Number of instances in this motif group
- 8
Unit IDs
5UYP|1|01|C|1686
5UYP|1|01|G|1687
5UYP|1|01|U|1688
5UYP|1|01|A|1689
5UYP|1|01|A|1690
5UYP|1|01|C|1691
*
5UYP|1|01|G|1696
5UYP|1|01|G|1697
5UYP|1|01|A|1698
5UYP|1|01|G|1699
5UYP|1|01|A|1700
5UYP|1|01|A|1701
5UYP|1|01|G|1702
Current chains
- Chain 01
- 23S ribosomal RNA
Nearby chains
- Chain 04
- 50S ribosomal protein L2
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
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