IL_5UYP_083

3D structure

PDB id

5UYP (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with near-cognate ternary complex base-paired to A site codon, open 30S (Structure II-nc)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GCUUUGAAGU*AUGGAGC

Length

17 nucleotides

Bulged bases

5UYP|1|01|U|2132

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5UYP|1|01|G|2128
5UYP|1|01|C|2129
5UYP|1|01|U|2130
5UYP|1|01|U|2131
5UYP|1|01|U|2132
5UYP|1|01|G|2133
5UYP|1|01|A|2134
5UYP|1|01|A|2135
5UYP|1|01|G|2136
5UYP|1|01|U|2137
*
5UYP|1|01|A|2154
5UYP|1|01|U|2155
5UYP|1|01|G|2156
5UYP|1|01|G|2157
5UYP|1|01|A|2158
5UYP|1|01|G|2159
5UYP|1|01|C|2160

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 03

50S ribosomal protein L1