IL_5UYP_090

3D structure

PDB id

5UYP (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with near-cognate ternary complex base-paired to A site codon, open 30S (Structure II-nc)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AUA*UGUUU

Length

8 nucleotides

Bulged bases

5UYP|1|01|U|2491

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UYP_090 not in the Motif Atlas

Geometric match to IL_5J7L_337

Geometric discrepancy: 0.14

The information below is about IL_5J7L_337

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_51387.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

21

Unit IDs

5UYP|1|01|A|2459
5UYP|1|01|U|2460
5UYP|1|01|A|2461
*
5UYP|1|01|U|2489
5UYP|1|01|G|2490
5UYP|1|01|U|2491
5UYP|1|01|U|2492
5UYP|1|01|U|2493

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 15

50S ribosomal protein L16