IL_5UYP_093

3D structure

PDB id

5UYP (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with near-cognate ternary complex base-paired to A site codon, open 30S (Structure II-nc)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

5UYP|1|01|G|2576, 5UYP|1|01|A|2577

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UYP_093 not in the Motif Atlas

Geometric match to IL_7RQB_097

Geometric discrepancy: 0.1234

The information below is about IL_7RQB_097

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_90933.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

11

Unit IDs

5UYP|1|01|C|2510
5UYP|1|01|U|2511
5UYP|1|01|C|2512
*
5UYP|1|01|G|2574
5UYP|1|01|C|2575
5UYP|1|01|G|2576
5UYP|1|01|A|2577
5UYP|1|01|G|2578

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 05

50S ribosomal protein L3

Chain 30

50S ribosomal protein L32