IL_5UYP_105

3D structure

PDB id

5UYP (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with near-cognate ternary complex base-paired to A site codon, open 30S (Structure II-nc)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGUG*CUAAC

Length

9 nucleotides

Bulged bases

5UYP|1|01|A|2872, 5UYP|1|01|A|2873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UYP_105 not in the Motif Atlas

Homologous match to IL_5J7L_353

Geometric discrepancy: 0.1353

The information below is about IL_5J7L_353

Detailed Annotation

Multiple bulged bases with non-canonical cWW

Broad Annotation

Multiple bulged bases with non-canonical cWW

Motif group

IL_64231.5

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

11

Unit IDs

5UYP|1|01|G|2843
5UYP|1|01|G|2844
5UYP|1|01|U|2845
5UYP|1|01|G|2846
*
5UYP|1|01|C|2870
5UYP|1|01|U|2871
5UYP|1|01|A|2872
5UYP|1|01|A|2873
5UYP|1|01|C|2874

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 05

50S ribosomal protein L3

Chain 16

50S ribosomal protein L17

Chain 18

50S ribosomal protein L19