IL_5UYP_130

3D structure

PDB id

5UYP (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with near-cognate ternary complex base-paired to A site codon, open 30S (Structure II-nc)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UYP_130 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.1466

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

5UYP|1|A|U|409
5UYP|1|A|G|410
5UYP|1|A|A|411
5UYP|1|A|A|412
5UYP|1|A|G|413
5UYP|1|A|A|414
5UYP|1|A|A|415
5UYP|1|A|G|416
*
5UYP|1|A|U|427
5UYP|1|A|G|428
5UYP|1|A|U|429
5UYP|1|A|A|430
5UYP|1|A|A|431
5UYP|1|A|A|432
5UYP|1|A|G|433

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain D

30S ribosomal protein S4