IL_5UYP_136

3D structure

PDB id

5UYP (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with near-cognate ternary complex base-paired to A site codon, open 30S (Structure II-nc)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

5UYP|1|A|A|572

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UYP_136 not in the Motif Atlas

Homologous match to IL_5J7L_026

Geometric discrepancy: 0.1523

The information below is about IL_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.6

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

4

Unit IDs

5UYP|1|A|C|569
5UYP|1|A|G|570
5UYP|1|A|U|571
5UYP|1|A|A|572
5UYP|1|A|A|573
5UYP|1|A|A|574
5UYP|1|A|G|575
*
5UYP|1|A|C|880
5UYP|1|A|G|881

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain L

30S ribosomal protein S12

Chain Q

30S ribosomal protein S17