IL_5UYP_169

3D structure

PDB id

5UYP (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with near-cognate ternary complex base-paired to A site codon, open 30S (Structure II-nc)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UYP_169 not in the Motif Atlas

Geometric match to IL_5VCI_002

Geometric discrepancy: 0.1335

The information below is about IL_5VCI_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

5UYP|1|A|G|1405
5UYP|1|A|U|1406
5UYP|1|A|C|1407
*
5UYP|1|A|G|1494
5UYP|1|A|U|1495
5UYP|1|A|C|1496

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain 01

Large subunit ribosomal RNA; LSU rRNA

Chain V

mRNA

Chain W

Transfer RNA; tRNA

Chain Y

Transfer RNA; tRNA