IL_5UYP_179

3D structure

PDB id

5UYP (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with near-cognate ternary complex base-paired to A site codon, open 30S (Structure II-nc)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUUGGC*GCCAUC

Length

12 nucleotides

Bulged bases

5UYP|1|01|U|1061

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5UYP|1|01|G|1059
5UYP|1|01|U|1060
5UYP|1|01|U|1061
5UYP|1|01|G|1062
5UYP|1|01|G|1063
5UYP|1|01|C|1064
*
5UYP|1|01|G|1074
5UYP|1|01|C|1075
5UYP|1|01|C|1076
5UYP|1|01|A|1077
5UYP|1|01|U|1078
5UYP|1|01|C|1079

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 11

50S ribosomal protein L11

Chain 15

50S ribosomal protein L16