IL_5UYP_187

3D structure

PDB id

5UYP (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with near-cognate ternary complex base-paired to A site codon, open 30S (Structure II-nc)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAAG*UGUGCCUUCGGGAAC

Length

19 nucleotides

Bulged bases

5UYP|1|A|U|1030, 5UYP|1|A|C|1031, 5UYP|1|A|G|1032

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5UYP|1|A|G|1003
5UYP|1|A|A|1004
5UYP|1|A|A|1005
5UYP|1|A|G|1006
*
5UYP|1|A|U|1023
5UYP|1|A|G|1024
5UYP|1|A|U|1025
5UYP|1|A|G|1026
5UYP|1|A|C|1027
5UYP|1|A|C|1028
5UYP|1|A|U|1029
5UYP|1|A|U|1030
5UYP|1|A|C|1031
5UYP|1|A|G|1032
5UYP|1|A|G|1033
5UYP|1|A|G|1034
5UYP|1|A|A|1035
5UYP|1|A|A|1036
5UYP|1|A|C|1037

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain N

30S ribosomal protein S14