IL_5UYP_189

3D structure

PDB id

5UYP (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with near-cognate ternary complex base-paired to A site codon, open 30S (Structure II-nc)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

5UYP|1|01|G|277

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UYP_189 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.2964

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

5UYP|1|01|C|274
5UYP|1|01|C|275
5UYP|1|01|U|276
5UYP|1|01|G|277
5UYP|1|01|A|278
5UYP|1|01|A|279
5UYP|1|01|U|280
5UYP|1|01|C|281
*
5UYP|1|01|G|359
5UYP|1|01|U|360
5UYP|1|01|G|361
5UYP|1|01|A|362
5UYP|1|01|G|363

Current chains

Chain 01

23S ribosomal RNA

Nearby chains