IL_5UYQ_029

3D structure

PDB id

5UYQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with near-cognate ternary complex base-paired to A site codon, closed 30S (Structure III-nc)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GCAAG*CAACC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UYQ_029 not in the Motif Atlas

Homologous match to IL_5J7L_274

Geometric discrepancy: 0.2581

The information below is about IL_5J7L_274

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

5UYQ|1|01|G|875
5UYQ|1|01|C|876
5UYQ|1|01|A|877
5UYQ|1|01|A|878
5UYQ|1|01|G|879
*
5UYQ|1|01|C|898
5UYQ|1|01|A|899
5UYQ|1|01|A|900
5UYQ|1|01|C|901
5UYQ|1|01|C|902

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 15

50S ribosomal protein L16