IL_5UYQ_033

3D structure

PDB id

5UYQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with near-cognate ternary complex base-paired to A site codon, closed 30S (Structure III-nc)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UCCCAAAG*CA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UYQ_033 not in the Motif Atlas

Geometric match to IL_4WF9_037

Geometric discrepancy: 0.1532

The information below is about IL_4WF9_037

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_11411.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

5UYQ|1|01|U|1004
5UYQ|1|01|C|1005
5UYQ|1|01|C|1006
5UYQ|1|01|C|1007
5UYQ|1|01|A|1008
5UYQ|1|01|A|1009
5UYQ|1|01|A|1010
5UYQ|1|01|G|1011
*
5UYQ|1|01|C|1150
5UYQ|1|01|A|1151

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 12

50S ribosomal protein L13

Chain 19

50S ribosomal protein L20