IL_5UYQ_035

3D structure

PDB id

5UYQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with near-cognate ternary complex base-paired to A site codon, closed 30S (Structure III-nc)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

5UYQ|1|01|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UYQ_035 not in the Motif Atlas

Geometric match to IL_4WF9_039

Geometric discrepancy: 0.1677

The information below is about IL_4WF9_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

5UYQ|1|01|U|1018
5UYQ|1|01|U|1019
5UYQ|1|01|A|1020
5UYQ|1|01|A|1021
5UYQ|1|01|G|1022
5UYQ|1|01|U|1023
5UYQ|1|01|G|1024
*
5UYQ|1|01|C|1140
5UYQ|1|01|U|1141
5UYQ|1|01|A|1142
5UYQ|1|01|A|1143
5UYQ|1|01|A|1144

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 08

50S ribosomal protein L6

Chain 12

50S ribosomal protein L13

Chain 34

50S ribosomal protein L36