IL_5UYQ_051

3D structure

PDB id

5UYQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with near-cognate ternary complex base-paired to A site codon, closed 30S (Structure III-nc)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGAAG*CUAAG

Length

10 nucleotides

Bulged bases

5UYQ|1|01|A|1420

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UYQ_051 not in the Motif Atlas

Homologous match to IL_5J7L_295

Geometric discrepancy: 0.12

The information below is about IL_5J7L_295

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_38507.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

16

Unit IDs

5UYQ|1|01|C|1417
5UYQ|1|01|G|1418
5UYQ|1|01|A|1419
5UYQ|1|01|A|1420
5UYQ|1|01|G|1421
*
5UYQ|1|01|C|1577
5UYQ|1|01|U|1578
5UYQ|1|01|A|1579
5UYQ|1|01|A|1580
5UYQ|1|01|G|1581

Current chains

Chain 01

23S ribosomal RNA

Nearby chains