IL_5UYQ_054

3D structure

PDB id

5UYQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with near-cognate ternary complex base-paired to A site codon, closed 30S (Structure III-nc)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GC*GUC

Length

5 nucleotides

Bulged bases

5UYQ|1|01|U|1460

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UYQ_054 not in the Motif Atlas

Geometric match to IL_5J7L_298

Geometric discrepancy: 0.3617

The information below is about IL_5J7L_298

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

5UYQ|1|01|G|1450
5UYQ|1|01|C|1451
*
5UYQ|1|01|G|1459
5UYQ|1|01|U|1460
5UYQ|1|01|C|1461

Current chains

Chain 01

23S ribosomal RNA

Nearby chains