IL_5UYQ_056

3D structure

PDB id

5UYQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with near-cognate ternary complex base-paired to A site codon, closed 30S (Structure III-nc)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUGUAG*UGAGGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UYQ_056 not in the Motif Atlas

Geometric match to IL_7A0S_027

Geometric discrepancy: 0.3817

The information below is about IL_7A0S_027

Detailed Annotation

5x5 Sarcin-Ricin with intercalated A; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_81631.1

Basepair signature

cWW-L-R-cSH-R-R-L-R-cWW

Number of instances in this motif group

2

Unit IDs

5UYQ|1|01|G|1473
5UYQ|1|01|U|1474
5UYQ|1|01|G|1475
5UYQ|1|01|U|1476
5UYQ|1|01|A|1477
5UYQ|1|01|G|1478
*
5UYQ|1|01|U|1513
5UYQ|1|01|G|1514
5UYQ|1|01|A|1515
5UYQ|1|01|G|1516
5UYQ|1|01|G|1517
5UYQ|1|01|C|1518

Current chains

Chain 01

23S ribosomal RNA

Nearby chains